Departments and Journal links
Department of Botany and Plant Pathology
Microbiology@Oregon State University
LinkOut Journals by Provider
Journal of Bacteriology
National Center for Biotechnology Information (NCBI)
Microbiology
Science
Nitrification Network

Laboratory Safety Related
Chemical Inventory Program, Laboratory-Specific Chemical Hygiene Plan (LCHP) .

Vendors
VWR, Fisher, Sigma, ThermoFisher (Invitrogen et al.), Chemstores
Methods:
Culturing N. europaea; CHO titration; Culturing P.butanovora; Ammonia in N. europaea medium; Nitrate in Nitrobacter medium; Nitrite by the Greiss assay;
Stock solutions
Stock solution recipes
Media
Bock mineral salts medium; Ammonia medium for Nitrosmonas europaea; Ammonia medium for Nitrosococcus; Ammonia medium for Nitrosospira; Medium for Nitrobacter chemostat: Ammonia medium (for carbon-limitation chemostat)

Chemical Data Sheets:
OSU access to MSDS Databases or MSDS Databases or Where to find MSDS on the Internet

Tools for genome analysis
ACT: A DNA Sequence Comparison Viewer
WebACT: Sanger Centre Pathogen Sequencing Unit
DOE Joint Genome Institute
DOE: Joint Genome Institute. Integrated Microbial Genomes
KEGG: Kyoto Encyclopedia of Genes and Genomes
Center for Genome Research and Biocomputing at OSU
NEBcutter2

CGRB Core Laboratories
Translate tool ExPASy
Primer3 (v. 0.4.0) Pick primers from a DNA sequence.
T-Coffee
The Sequence Manipulation Suite
Solubility of Oxygen in Water
PlasMapper
GenScript Tools

Genomes
Nitrosomonas europaea complete genome sequence and annotation
Nitrosomonas eutropha C91 genome sequence analysis files
Nitrobacter hamburgensis genome sequence analysis files
Nitrobacter winogradsky genome sequence analysis files
Nitrosococcus oceani ATCC 19707 genome sequence analysis files
Nitrosospira multiformis ATCC 25196 genome sequence analysis files
Nitrosopumilus maritimus SCMI genome sequence analysis files

RAST (Rapid Annotation using Subsystem Technology)

Workshops
Nitrification Network Workshops The process of nitrification.

DATA
Data microarrays;starvation; Xue et al. FEMS 2006; Download MS Excel file